mod_ribtree Module


Uses

  • module~~mod_ribtree~~UsesGraph module~mod_ribtree mod_ribtree module~mod_tree mod_tree module~mod_ribtree->module~mod_tree module~mod_constants mod_constants module~mod_ribtree->module~mod_constants module~mod_profiling mod_profiling module~mod_ribtree->module~mod_profiling module~mod_fmm_utils mod_fmm_utils module~mod_ribtree->module~mod_fmm_utils module~mod_tree->module~mod_constants module~mod_tree->module~mod_fmm_utils module~mod_adjacency_mat mod_adjacency_mat module~mod_tree->module~mod_adjacency_mat iso_c_binding iso_c_binding module~mod_constants->iso_c_binding module~mod_profiling->module~mod_constants module~mod_memory mod_memory module~mod_profiling->module~mod_memory module~mod_io mod_io module~mod_profiling->module~mod_io module~mod_fmm_utils->module~mod_constants module~mod_adjacency_mat->module~mod_memory module~mod_memory->module~mod_constants module~mod_memory->iso_c_binding module~mod_memory->module~mod_io module~mod_io->module~mod_constants

Used by

  • module~~mod_ribtree~~UsedByGraph module~mod_ribtree mod_ribtree module~fmmlib_interface fmmlib_interface module~fmmlib_interface->module~mod_ribtree module~mod_electrostatics mod_electrostatics module~mod_electrostatics->module~fmmlib_interface proc~ommp_get_polelec_energy ommp_get_polelec_energy proc~ommp_get_polelec_energy->module~mod_electrostatics module~mod_polarization mod_polarization proc~ommp_get_polelec_energy->module~mod_polarization proc~ommp_get_fixedelec_energy ommp_get_fixedelec_energy proc~ommp_get_fixedelec_energy->module~mod_electrostatics module~mod_prm mod_prm module~mod_prm->module~mod_electrostatics proc~ommp_potential_pol2ext ommp_potential_pol2ext proc~ommp_potential_pol2ext->module~mod_electrostatics module~mod_polarization->module~mod_electrostatics module~mod_mmpol mod_mmpol module~mod_polarization->module~mod_mmpol proc~polelec_geomgrad polelec_geomgrad proc~polelec_geomgrad->module~mod_electrostatics proc~polelec_geomgrad->module~mod_polarization module~mod_iohdf5 mod_iohdf5 module~mod_iohdf5->module~mod_electrostatics module~mod_iohdf5->module~mod_mmpol proc~electrostatic_for_ene electrostatic_for_ene proc~electrostatic_for_ene->module~mod_electrostatics proc~rotation_geomgrad rotation_geomgrad proc~rotation_geomgrad->module~mod_electrostatics proc~rotate_multipoles rotate_multipoles proc~rotate_multipoles->module~mod_electrostatics proc~assign_pol assign_pol proc~assign_pol->module~mod_electrostatics proc~mmpol_prepare mmpol_prepare proc~mmpol_prepare->module~mod_electrostatics proc~ommp_set_default_solver ommp_set_default_solver proc~ommp_set_default_solver->module~mod_electrostatics proc~fixedelec_geomgrad fixedelec_geomgrad proc~fixedelec_geomgrad->module~mod_electrostatics proc~mmpol_terminate mmpol_terminate proc~mmpol_terminate->module~mod_electrostatics proc~init_eel_for_link_atom init_eel_for_link_atom proc~init_eel_for_link_atom->module~mod_electrostatics proc~init_eel_for_link_atom->module~mod_prm module~ommp_interface ommp_interface module~ommp_interface->module~mod_electrostatics module~ommp_interface->module~mod_prm module~ommp_interface->module~mod_iohdf5 module~ommp_interface->module~mod_mmpol module~mod_qm_helper mod_qm_helper module~ommp_interface->module~mod_qm_helper proc~ommp_set_default_matv ommp_set_default_matv proc~ommp_set_default_matv->module~mod_electrostatics proc~ommp_potential_mm2ext ommp_potential_mm2ext proc~ommp_potential_mm2ext->module~mod_electrostatics proc~ommp_field_pol2ext ommp_field_pol2ext proc~ommp_field_pol2ext->module~mod_electrostatics proc~ommp_turn_pol_off ommp_turn_pol_off proc~ommp_turn_pol_off->module~mod_electrostatics proc~ommp_potential_mmpol2ext ommp_potential_mmpol2ext proc~ommp_potential_mmpol2ext->module~mod_electrostatics proc~ommp_set_external_field ommp_set_external_field proc~ommp_set_external_field->module~mod_electrostatics proc~ommp_set_external_field->module~mod_polarization proc~mmpol_init_from_xyz mmpol_init_from_xyz proc~mmpol_init_from_xyz->module~mod_electrostatics proc~mmpol_init_from_xyz->module~mod_prm proc~mmpol_init_from_xyz->module~mod_mmpol proc~mmpol_init_from_hdf5 mmpol_init_from_hdf5 proc~mmpol_init_from_hdf5->module~mod_electrostatics proc~mmpol_init_from_hdf5->module~mod_mmpol proc~assign_mpoles assign_mpoles proc~assign_mpoles->module~mod_electrostatics proc~mmpol_init mmpol_init proc~mmpol_init->module~mod_electrostatics proc~mmpol_init_from_mmp mmpol_init_from_mmp proc~mmpol_init_from_mmp->module~mod_electrostatics proc~mmpol_init_from_mmp->module~mod_mmpol proc~dipole_t dipole_T proc~dipole_t->module~mod_electrostatics proc~c_ommp_field_mm2ext C_ommp_field_mm2ext proc~c_ommp_field_mm2ext->module~mod_electrostatics proc~c_ommp_set_fmm_distance C_ommp_set_fmm_distance proc~c_ommp_set_fmm_distance->module~mod_electrostatics proc~c_ommp_field_pol2ext C_ommp_field_pol2ext proc~c_ommp_field_pol2ext->module~mod_electrostatics proc~update_coordinates update_coordinates proc~update_coordinates->module~mod_electrostatics module~mod_mmpol->module~mod_electrostatics proc~tmatvec_otf TMatVec_otf proc~tmatvec_otf->module~mod_electrostatics proc~ommp_field_mm2ext ommp_field_mm2ext proc~ommp_field_mm2ext->module~mod_electrostatics proc~c_ommp_set_fmm_min_cell_size C_ommp_set_fmm_min_cell_size proc~c_ommp_set_fmm_min_cell_size->module~mod_electrostatics proc~ommp_field_mmpol2ext ommp_field_mmpol2ext proc~ommp_field_mmpol2ext->module~mod_electrostatics proc~electrostatic_for_grad electrostatic_for_grad proc~electrostatic_for_grad->module~mod_electrostatics module~mod_solvers mod_solvers module~mod_solvers->module~mod_electrostatics proc~c_ommp_update_coordinates C_ommp_update_coordinates proc~c_ommp_update_coordinates->module~mod_mmpol proc~ommp_system_from_qm_helper ommp_system_from_qm_helper proc~ommp_system_from_qm_helper->module~mod_prm proc~ommp_system_from_qm_helper->module~mod_mmpol module~mod_ommp_c_interface mod_ommp_C_interface module~mod_ommp_c_interface->module~ommp_interface proc~c_ommp_full_geomgrad C_ommp_full_geomgrad proc~c_ommp_full_geomgrad->module~ommp_interface proc~ommp_create_link_atom ommp_create_link_atom proc~ommp_create_link_atom->module~mod_mmpol proc~ommp_create_link_atom->module~mod_qm_helper proc~qm_helper_vdw_geomgrad qm_helper_vdw_geomgrad proc~qm_helper_vdw_geomgrad->module~mod_mmpol proc~r2_hdf5_read_array r2_hdf5_read_array proc~r2_hdf5_read_array->module~mod_mmpol proc~r1_hdf5_read_array r1_hdf5_read_array proc~r1_hdf5_read_array->module~mod_mmpol proc~l1_hdf5_read_array l1_hdf5_read_array proc~l1_hdf5_read_array->module~mod_mmpol module~mod_geomgrad mod_geomgrad module~mod_geomgrad->module~mod_mmpol proc~i3_hdf5_read_array i3_hdf5_read_array proc~i3_hdf5_read_array->module~mod_mmpol proc~qm_helper_vdw_energy qm_helper_vdw_energy proc~qm_helper_vdw_energy->module~mod_mmpol proc~polarization polarization proc~polarization->module~mod_solvers proc~r3_hdf5_read_array r3_hdf5_read_array proc~r3_hdf5_read_array->module~mod_mmpol proc~qm_helper_link_atom_geomgrad qm_helper_link_atom_geomgrad proc~qm_helper_link_atom_geomgrad->module~mod_mmpol proc~l2_hdf5_read_array l2_hdf5_read_array proc~l2_hdf5_read_array->module~mod_mmpol module~mod_inputloader mod_inputloader module~mod_inputloader->module~mod_mmpol proc~i1_hdf5_read_array i1_hdf5_read_array proc~i1_hdf5_read_array->module~mod_mmpol module~mod_qm_helper->module~mod_mmpol proc~init_bonded_for_link_atom init_bonded_for_link_atom proc~init_bonded_for_link_atom->module~mod_prm proc~qm_helper_init_vdw_prm qm_helper_init_vdw_prm proc~qm_helper_init_vdw_prm->module~mod_prm proc~ommp_terminate ommp_terminate proc~ommp_terminate->module~mod_mmpol proc~i2_hdf5_read_array i2_hdf5_read_array proc~i2_hdf5_read_array->module~mod_mmpol proc~c_ommp_qm_helper_get_npol C_ommp_qm_helper_get_npol proc~c_ommp_qm_helper_get_npol->module~mod_qm_helper proc~ommp_qm_helper_vdw_geomgrad ommp_qm_helper_vdw_geomgrad proc~ommp_qm_helper_vdw_geomgrad->module~mod_qm_helper proc~c_ommp_qm_helper_get_frozen C_ommp_qm_helper_get_frozen proc~c_ommp_qm_helper_get_frozen->module~mod_qm_helper proc~c_ommp_qm_helper_get_h_n2m C_ommp_qm_helper_get_H_n2m proc~c_ommp_qm_helper_get_h_n2m->module~mod_qm_helper proc~ommp_fixedelec_geomgrad ommp_fixedelec_geomgrad proc~ommp_fixedelec_geomgrad->module~mod_geomgrad proc~ommp_polelec_geomgrad ommp_polelec_geomgrad proc~ommp_polelec_geomgrad->module~mod_geomgrad proc~c_ommp_qm_helper_get_g_n2p C_ommp_qm_helper_get_G_n2p proc~c_ommp_qm_helper_get_g_n2p->module~mod_qm_helper proc~c_ommp_qm_helper_get_e_n2p C_ommp_qm_helper_get_E_n2p proc~c_ommp_qm_helper_get_e_n2p->module~mod_qm_helper proc~c_ommp_qm_helper_get_e_m2n C_ommp_qm_helper_get_E_m2n proc~c_ommp_qm_helper_get_e_m2n->module~mod_qm_helper proc~ommp_qm_helper_vdw_energy ommp_qm_helper_vdw_energy proc~ommp_qm_helper_vdw_energy->module~mod_qm_helper proc~ommp_qm_helper_update_coord ommp_qm_helper_update_coord proc~ommp_qm_helper_update_coord->module~mod_qm_helper proc~ommp_update_link_atoms_position ommp_update_link_atoms_position proc~ommp_update_link_atoms_position->module~mod_qm_helper proc~ommp_terminate_qm_helper ommp_terminate_qm_helper proc~ommp_terminate_qm_helper->module~mod_qm_helper proc~c_ommp_qm_helper_get_qm_atoms C_ommp_qm_helper_get_qm_atoms proc~c_ommp_qm_helper_get_qm_atoms->module~mod_qm_helper proc~c_ommp_qm_helper_get_v_p2n C_ommp_qm_helper_get_V_p2n proc~c_ommp_qm_helper_get_v_p2n->module~mod_qm_helper proc~c_ommp_qm_helper_get_cqm C_ommp_qm_helper_get_cqm proc~c_ommp_qm_helper_get_cqm->module~mod_qm_helper proc~c_ommp_qm_helper_get_e_p2n C_ommp_qm_helper_get_E_p2n proc~c_ommp_qm_helper_get_e_p2n->module~mod_qm_helper proc~ommp_init_mmp ommp_init_mmp proc~ommp_init_mmp->module~mod_inputloader proc~ommp_init_xyz ommp_init_xyz proc~ommp_init_xyz->module~mod_inputloader proc~ommp_full_geomgrad ommp_full_geomgrad proc~ommp_full_geomgrad->module~mod_geomgrad proc~ommp_qm_helper_link_atom_geomgrad ommp_qm_helper_link_atom_geomgrad proc~ommp_qm_helper_link_atom_geomgrad->module~mod_qm_helper proc~c_ommp_terminate_qm_helper C_ommp_terminate_qm_helper proc~c_ommp_terminate_qm_helper->module~mod_qm_helper proc~c_ommp_qm_helper_get_g_n2m C_ommp_qm_helper_get_G_n2m proc~c_ommp_qm_helper_get_g_n2m->module~mod_qm_helper proc~c_ommp_qm_helper_get_e_n2m C_ommp_qm_helper_get_E_n2m proc~c_ommp_qm_helper_get_e_n2m->module~mod_qm_helper proc~ommp_init_qm_helper ommp_init_qm_helper proc~ommp_init_qm_helper->module~mod_qm_helper proc~c_ommp_qm_helper_get_nmm C_ommp_qm_helper_get_nmm proc~c_ommp_qm_helper_get_nmm->module~mod_qm_helper proc~c_ommp_qm_helper_use_nonbonded C_ommp_qm_helper_use_nonbonded proc~c_ommp_qm_helper_use_nonbonded->module~mod_qm_helper proc~c_ommp_qm_helper_get_v_m2n C_ommp_qm_helper_get_V_m2n proc~c_ommp_qm_helper_get_v_m2n->module~mod_qm_helper proc~c_ommp_qm_helper_use_frozen C_ommp_qm_helper_use_frozen proc~c_ommp_qm_helper_use_frozen->module~mod_qm_helper

Contents

Subroutines


Subroutines

public subroutine init_as_ribtree(t, c_particle, dfar)

Build a recursive inertial binary tree

Read more…

Arguments

Type IntentOptional Attributes Name
type(fmm_tree_type), intent(inout) :: t

Tree data structure to populate
real(kind=rp), intent(in), target :: c_particle(:,:)

Coordinates of the particles to insert in the tree
real(kind=rp), intent(in) :: dfar

Minimum size of a node

private subroutine tree_rib_node_bisect(c_particle, order, div)

Divide given cluster of spheres into two subclusters by inertial bisection

Read more…

Arguments

Type IntentOptional Attributes Name
real(kind=rp), intent(in) :: c_particle(:,:)
integer(kind=ip), intent(inout) :: order(:)
integer(kind=ip), intent(out) :: div