init_bonded_for_link_atom Subroutine

public subroutine init_bonded_for_link_atom(la, prmfile)

Uses

  • proc~~init_bonded_for_link_atom~~UsesGraph proc~init_bonded_for_link_atom init_bonded_for_link_atom module~mod_topology mod_topology proc~init_bonded_for_link_atom->module~mod_topology module~mod_bonded mod_bonded proc~init_bonded_for_link_atom->module~mod_bonded module~mod_io mod_io proc~init_bonded_for_link_atom->module~mod_io module~mod_prm mod_prm proc~init_bonded_for_link_atom->module~mod_prm module~mod_constants mod_constants proc~init_bonded_for_link_atom->module~mod_constants module~mod_memory mod_memory module~mod_topology->module~mod_memory module~mod_adjacency_mat mod_adjacency_mat module~mod_topology->module~mod_adjacency_mat module~mod_bonded->module~mod_topology module~mod_bonded->module~mod_io module~mod_bonded->module~mod_memory module~mod_io->module~mod_constants module~mod_prm->module~mod_topology module~mod_prm->module~mod_bonded module~mod_prm->module~mod_io module~mod_prm->module~mod_constants module~mod_prm->module~mod_memory module~mod_utils mod_utils module~mod_prm->module~mod_utils module~mod_electrostatics mod_electrostatics module~mod_prm->module~mod_electrostatics iso_c_binding iso_c_binding module~mod_constants->iso_c_binding module~mod_memory->module~mod_io module~mod_memory->module~mod_constants module~mod_memory->iso_c_binding module~mod_adjacency_mat->module~mod_memory module~mod_utils->module~mod_constants module~mod_utils->module~mod_memory module~mod_electrostatics->module~mod_topology module~mod_electrostatics->module~mod_io module~mod_electrostatics->module~mod_constants module~mod_electrostatics->module~mod_memory module~mod_electrostatics->module~mod_adjacency_mat module~fmmlib_interface fmmlib_interface module~mod_electrostatics->module~fmmlib_interface module~mod_profiling mod_profiling module~mod_electrostatics->module~mod_profiling module~fmmlib_interface->module~mod_constants module~mod_fmm mod_fmm module~fmmlib_interface->module~mod_fmm module~mod_ribtree mod_ribtree module~fmmlib_interface->module~mod_ribtree module~mod_harmonics mod_harmonics module~fmmlib_interface->module~mod_harmonics module~mod_tree mod_tree module~fmmlib_interface->module~mod_tree module~mod_fmm_utils mod_fmm_utils module~fmmlib_interface->module~mod_fmm_utils module~mod_octatree mod_octatree module~fmmlib_interface->module~mod_octatree module~mod_profiling->module~mod_io module~mod_profiling->module~mod_constants module~mod_profiling->module~mod_memory module~mod_fmm->module~mod_constants module~mod_fmm->module~mod_harmonics module~mod_fmm->module~mod_tree module~mod_fmm->module~mod_fmm_utils module~mod_ribtree->module~mod_constants module~mod_ribtree->module~mod_profiling module~mod_ribtree->module~mod_tree module~mod_ribtree->module~mod_fmm_utils module~mod_harmonics->module~mod_constants module~mod_harmonics->module~mod_fmm_utils module~mod_tree->module~mod_constants module~mod_tree->module~mod_adjacency_mat module~mod_tree->module~mod_fmm_utils module~mod_fmm_utils->module~mod_constants module~mod_octatree->module~mod_constants module~mod_octatree->module~mod_profiling module~mod_octatree->module~mod_tree module~mod_octatree->module~mod_fmm_utils

Insert in the bonded parameter required for the link atom between iqm and imm Link atoms should never appear in bonded interactions!

Arguments

Type IntentOptional Attributes Name
type(ommp_link_atom_type), intent(inout), target :: la
character(len=*), intent(in) :: prmfile

Calls

proc~~init_bonded_for_link_atom~~CallsGraph proc~init_bonded_for_link_atom init_bonded_for_link_atom proc~bond_init bond_init proc~init_bonded_for_link_atom->proc~bond_init proc~ommp_message ommp_message proc~init_bonded_for_link_atom->proc~ommp_message proc~assign_angle assign_angle proc~init_bonded_for_link_atom->proc~assign_angle proc~bond_terminate bond_terminate proc~init_bonded_for_link_atom->proc~bond_terminate proc~angle_init angle_init proc~init_bonded_for_link_atom->proc~angle_init proc~assign_torsion assign_torsion proc~init_bonded_for_link_atom->proc~assign_torsion proc~torsion_init torsion_init proc~init_bonded_for_link_atom->proc~torsion_init proc~bonded_terminate bonded_terminate proc~init_bonded_for_link_atom->proc~bonded_terminate proc~torsion_terminate torsion_terminate proc~init_bonded_for_link_atom->proc~torsion_terminate proc~check_conn_matrix check_conn_matrix proc~init_bonded_for_link_atom->proc~check_conn_matrix proc~assign_bond assign_bond proc~init_bonded_for_link_atom->proc~assign_bond proc~str_to_lower str_to_lower proc~init_bonded_for_link_atom->proc~str_to_lower proc~large_file_read large_file_read proc~init_bonded_for_link_atom->proc~large_file_read proc~str_uncomment str_uncomment proc~init_bonded_for_link_atom->proc~str_uncomment proc~angle_terminate angle_terminate proc~init_bonded_for_link_atom->proc~angle_terminate proc~fatal_error fatal_error proc~init_bonded_for_link_atom->proc~fatal_error interface~mallocate mallocate proc~bond_init->interface~mallocate proc~assign_angle->proc~ommp_message proc~assign_angle->proc~angle_init proc~assign_angle->proc~fatal_error proc~assign_angle->interface~mallocate proc~isint isint proc~assign_angle->proc~isint proc~isreal isreal proc~assign_angle->proc~isreal proc~tokenize tokenize proc~assign_angle->proc~tokenize proc~read_atom_cards read_atom_cards proc~assign_angle->proc~read_atom_cards interface~mfree mfree proc~assign_angle->interface~mfree proc~bond_terminate->interface~mfree proc~angle_init->interface~mallocate proc~assign_torsion->proc~ommp_message proc~assign_torsion->proc~torsion_init proc~assign_torsion->proc~fatal_error proc~assign_torsion->interface~mallocate proc~assign_torsion->proc~isint proc~assign_torsion->proc~isreal proc~assign_torsion->proc~tokenize proc~assign_torsion->proc~read_atom_cards proc~assign_torsion->interface~mfree proc~torsion_init->interface~mallocate proc~bonded_terminate->proc~bond_terminate proc~bonded_terminate->proc~torsion_terminate proc~bonded_terminate->proc~angle_terminate proc~angtor_terminate angtor_terminate proc~bonded_terminate->proc~angtor_terminate proc~tortor_terminate tortor_terminate proc~bonded_terminate->proc~tortor_terminate proc~strtor_terminate strtor_terminate proc~bonded_terminate->proc~strtor_terminate proc~opb_terminate opb_terminate proc~bonded_terminate->proc~opb_terminate proc~strbnd_terminate strbnd_terminate proc~bonded_terminate->proc~strbnd_terminate proc~urey_terminate urey_terminate proc~bonded_terminate->proc~urey_terminate proc~imptorsion_terminate imptorsion_terminate proc~bonded_terminate->proc~imptorsion_terminate proc~pitors_terminate pitors_terminate proc~bonded_terminate->proc~pitors_terminate proc~torsion_terminate->interface~mfree proc~check_conn_matrix->proc~fatal_error proc~copy_yale_sparse copy_yale_sparse proc~check_conn_matrix->proc~copy_yale_sparse proc~build_conn_upto_n build_conn_upto_n proc~check_conn_matrix->proc~build_conn_upto_n proc~free_yale_sparse free_yale_sparse proc~check_conn_matrix->proc~free_yale_sparse proc~assign_bond->proc~bond_init proc~assign_bond->proc~ommp_message proc~assign_bond->proc~fatal_error proc~assign_bond->interface~mallocate proc~assign_bond->proc~isint proc~assign_bond->proc~isreal proc~assign_bond->proc~tokenize proc~assign_bond->proc~read_atom_cards proc~assign_bond->interface~mfree proc~large_file_read->proc~fatal_error proc~angle_terminate->interface~mfree proc~fatal_error->proc~ommp_message proc~close_output close_output proc~fatal_error->proc~close_output proc~build_conn_upto_n->proc~copy_yale_sparse proc~build_conn_upto_n->proc~free_yale_sparse proc~sparse_identity sparse_identity proc~build_conn_upto_n->proc~sparse_identity proc~mat_andnot mat_andnot proc~build_conn_upto_n->proc~mat_andnot proc~mat_mult mat_mult proc~build_conn_upto_n->proc~mat_mult proc~angtor_terminate->interface~mfree proc~tortor_terminate->interface~mfree proc~r_alloc2 r_alloc2 interface~mallocate->proc~r_alloc2 proc~i_alloc2 i_alloc2 interface~mallocate->proc~i_alloc2 proc~l_alloc1 l_alloc1 interface~mallocate->proc~l_alloc1 proc~l_alloc2 l_alloc2 interface~mallocate->proc~l_alloc2 proc~r_alloc1 r_alloc1 interface~mallocate->proc~r_alloc1 proc~i_alloc1 i_alloc1 interface~mallocate->proc~i_alloc1 proc~r_alloc3 r_alloc3 interface~mallocate->proc~r_alloc3 proc~i_alloc3 i_alloc3 interface~mallocate->proc~i_alloc3 proc~read_atom_cards->proc~fatal_error proc~read_atom_cards->interface~mallocate proc~read_atom_cards->proc~isint proc~read_atom_cards->proc~tokenize proc~read_atom_cards->interface~mfree proc~count_substr_occurence count_substr_occurence proc~read_atom_cards->proc~count_substr_occurence proc~r_free3 r_free3 interface~mfree->proc~r_free3 proc~l_free1 l_free1 interface~mfree->proc~l_free1 proc~i_free1 i_free1 interface~mfree->proc~i_free1 proc~l_free2 l_free2 interface~mfree->proc~l_free2 proc~r_free2 r_free2 interface~mfree->proc~r_free2 proc~i_free2 i_free2 interface~mfree->proc~i_free2 proc~i_free3 i_free3 interface~mfree->proc~i_free3 proc~r_free1 r_free1 interface~mfree->proc~r_free1 proc~strtor_terminate->interface~mfree proc~opb_terminate->interface~mfree proc~strbnd_terminate->interface~mfree proc~urey_terminate->interface~mfree proc~imptorsion_terminate->interface~mfree proc~close_output->proc~ommp_message proc~pitors_terminate->interface~mfree proc~chk_free chk_free proc~r_free3->proc~chk_free proc~l_free1->proc~chk_free proc~chk_alloc chk_alloc proc~r_alloc2->proc~chk_alloc proc~memory_init memory_init proc~r_alloc2->proc~memory_init proc~i_alloc2->proc~chk_alloc proc~i_alloc2->proc~memory_init proc~l_alloc1->proc~chk_alloc proc~l_alloc1->proc~memory_init proc~l_alloc2->proc~chk_alloc proc~l_alloc2->proc~memory_init proc~i_free1->proc~chk_free proc~l_free2->proc~chk_free proc~r_free2->proc~chk_free proc~i_free2->proc~chk_free proc~i_free3->proc~chk_free proc~reallocate_mat reallocate_mat proc~mat_andnot->proc~reallocate_mat proc~r_alloc1->proc~chk_alloc proc~r_alloc1->proc~memory_init proc~mat_mult->proc~reallocate_mat proc~i_alloc1->proc~chk_alloc proc~i_alloc1->proc~memory_init proc~r_alloc3->proc~chk_alloc proc~r_alloc3->proc~memory_init proc~i_alloc3->proc~chk_alloc proc~i_alloc3->proc~memory_init proc~r_free1->proc~chk_free proc~chk_free->proc~fatal_error proc~chk_alloc->proc~fatal_error

Called by

proc~~init_bonded_for_link_atom~~CalledByGraph proc~init_bonded_for_link_atom init_bonded_for_link_atom proc~ommp_create_link_atom ommp_create_link_atom proc~ommp_create_link_atom->proc~init_bonded_for_link_atom proc~c_ommp_create_link_atom C_ommp_create_link_atom proc~c_ommp_create_link_atom->proc~ommp_create_link_atom

Contents